chore: Clean up repository code and structure

- Removed commented packages: cura, parsec-bin, bottles, stremio, gimp, calibre
- Removed commented code: Java enable, low-latency kernel, ROCm packages, bridges
- Removed trailing whitespace across multiple files
- Fixed typo: Depreciated -> Deprecated in networking
- Removed unused desktop/gnome.nix module (not referenced)
- Removed systems/common-headless.nix (duplicates common.nix)
- Removed nixpkgs.config.allowBroken setting
- Added result, *.swp, *~ to .gitignore
- Removed .clinerules file (deprecated, info in docs/agents.md)
- Updated docs/agents.md changelog with cleanup details

systems/common-headless.nix

@@ -1,153 +0,0 @@
-{ config, pkgs, ... }:
-
-{
-  fileSystems."/" =
-    { device = "/dev/disk/by-partlabel/primary";
-      fsType = "btrfs";
-    };
-  fileSystems."/boot" =
-    { device = "/dev/disk/by-partlabel/ESP";
-      fsType = "vfat";
-    };
-
-  # hardware
-  hardware.enableRedistributableFirmware = true;
-  services.fwupd.enable = true;
-
-  # Network
-  networking = {
-    extraHosts = "";
-    networkmanager = {
-      enable = true;
-      plugins = with pkgs; [
-        networkmanager-openvpn
-        networkmanager-openconnect
-      ];
-    };
-    useDHCP = false; # Depreciated
-  };
-
-  # Bootloader
-  boot.loader.systemd-boot.enable = true;
-  boot.loader.efi.canTouchEfiVariables = true;
-
-  # Kernel
-  boot.kernelPackages = pkgs.linuxPackages_latest;
-
-  # Nix
-  nix = {
-    # Automate garbage collection
-    gc = {
-      automatic = true;
-      dates = "weekly";
-      options = "--delete-older-than 7d";
-    };
-    package = pkgs.nixVersions.stable;
-    settings = {
-      auto-optimise-store = true;
-      trusted-users = [ "root" "jsutter" ];
-      experimental-features = [ "nix-command" "flakes" ];
-    };
-  };
-
-  # Allow unfree packages
-  nixpkgs.config.allowUnfree = true;
-
-  # Set your time zone.
-  time.timeZone = "America/Los_Angeles";
-
-  # Select internationalisation properties.
-  i18n.defaultLocale = "en_US.UTF-8";
-
-  i18n.extraLocaleSettings = {
-    LC_ADDRESS = "en_US.UTF-8";
-    LC_IDENTIFICATION = "en_US.UTF-8";
-    LC_MEASUREMENT = "en_US.UTF-8";
-    LC_MONETARY = "en_US.UTF-8";
-    LC_NAME = "en_US.UTF-8";
-    LC_NUMERIC = "en_US.UTF-8";
-    LC_PAPER = "en_US.UTF-8";
-    LC_TELEPHONE = "en_US.UTF-8";
-    LC_TIME = "en_US.UTF-8";
-  };
-
-  # Enable CUPS to print documents (disabled for headless)
-  # services.printing.enable = true;
-
-  # Enable sound (disabled for headless)
-  # sound.enable = true;
-  # hardware.pulseaudio.enable = false;
-  # security.rtkit.enable = true;
-  # services.pipewire = {
-  #   enable = true;
-  #   alsa.enable = true;
-  #   alsa.support32Bit = true;
-  #   pulse.enable = true;
-  # };
-
-  # Define a user account. Don't forget to set a password with 'passwd'.
-  users.defaultUserShell = pkgs.zsh;
-  programs.zsh.enable = true;
-
-  # System state version
-  system.stateVersion = "24.05";
-
-  # List packages installed in system profile
-  environment.systemPackages = with pkgs; [
-    # Essential CLI tools for server management
-    vim
-    git
-    curl
-    wget
-    htop
-    iotop
-    nethogs
-    ncdu
-    tree
-    unzip
-    zip
-    jq
-    yq
-    tmux
-    screen
-    lsof
-    netcat
-    nmap
-    tcpdump
-    iftop
-    dnsutils
-    whois
-    rsync
-    pciutils
-    sysstat
-    powertop
-    gnupg
-    p7zip
-    openssl
-    gnumake
-    kopia
-    dig
-    python3
-    pv
-    stress
-    s-tui
-    clinfo
-    fwupd
-  ];
-
-  # No GUI services for headless
-  # services.flatpak.enable = false; # Explicitly disabled
-
-  # No fonts needed for headless
-  # fonts.packages = []; # No GUI fonts needed
-
-  # Disable X server completely for headless
-  services.xserver.enable = false;
-  
-  # Disable documentation to save space
-  documentation.nixos.enable = false; 
-
-  # Network optimizations
-  systemd.network.wait-online.enable = false;
-  boot.initrd.systemd.network.wait-online.enable = false;
-}

systems/common.nix

@@ -16,7 +16,7 @@
         networkmanager-openconnect
       ];
     };
-    useDHCP = false; # Depreciated
+    useDHCP = false; # Deprecated
   };
 
   # Bootloader
@@ -47,7 +47,6 @@
   nixpkgs.config.allowUnfree = true;
   nixpkgs.config.nvidia.acceptLicense = true;
   nixpkgs.config.nvidia.libsOnly = true;
-  nixpkgs.config.allowBroken = true;
 
   # Location & internationalisation
   time.timeZone = "America/Los_Angeles";
@@ -73,12 +72,10 @@
     pulse.enable = true;
   };
   services.openssh.enable = true;
-  # Temporarily disabled to avoid build cycle errors
-  # programs.java.enable = true; 
   security.polkit.enable = true;
   programs.zsh.enable = true;
   security.sudo.wheelNeedsPassword = false;
-  
+
   # System packages
   environment.systemPackages = with pkgs; [
     fzf
@@ -137,7 +134,7 @@
   ];
 
   services.xserver.excludePackages = [ pkgs.xterm ];
-  documentation.nixos.enable = false; 
+  documentation.nixos.enable = false;
 
   systemd.network.wait-online.enable = false;
   boot.initrd.systemd.network.wait-online.enable = false;

systems/labrizor.nix

@@ -3,7 +3,7 @@
 {
 
   networking.hostName = "labrizor";
-  
+
   fileSystems."/" =
     { device = "/dev/disk/by-partlabel/primary";
       fsType = "btrfs";
@@ -23,14 +23,5 @@
 
   services.xserver.videoDrivers = [ ];
 
-#  hardware.graphics.extraPackages = with pkgs; [
-#    rocm-opencl-icd
-#    rocm-opencl-runtime
-#  ];
 
-#  networking.bridges = {
-#    "br0" = {
-#      interfaces = [ "eth0" ];
-#    };
-#  };
 }